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Gateways
- Bioinformatics
Links Directory
The website of the UBC
Bioinformatics Centre
(University of British Columbia, CA) features curated links to
molecular resources, tools and databases. All of the resources are free
or available for a nominal fee. The links listed in this directory are
selected on the basis of recommendations from bioinformatics experts in
the field.
- European
Bioinformatics Institute
(EBI)
Center for research and services
in
bioinformatics. The Institute
manages databases of biological data including nucleic acid, protein
sequences and macromolecular structures.
- ExPASy
Life Science
Directory
A well organized collection of <
1000 web links from the Expert Protein Analysis
System,
a Proteomics and Molecular Biology Server for the analysis of protein
sequences and structures as well as 2-D PAGE.
Links are provided from the follwing categories:
- Protein db, 3D structure db, 2D-PAGE & MS
db, DNA/RNA db,
Carbohydrates
db, Organisms
specific db, Human
mutation db, Genes/proteins
specific db, PTM db,
Phylogenetics
db, Microarrays
db, Patents,
References,
Dict.,
primers &
nomenclat., Biol.
soft. & db catalogs, Gateways, Biol. journals &
publishers, Biol.
societies, Biocomputing
servers, Biotech.
companies, Bioinformatics companies,
Misc.
medical ref. sites, Misc. scientific ref.
sites
- Helmholtz
Network for
Bioinformatics
A user-friendly web interface
for
integrating complex bioinformatics tasks.
It is a joint venture of leading German bioinformatics research groups
and offers convenient access to numerous bioinformatics resources
through a single web portal.
"In the problem
oriented approach, the user is guided by a
detailed, tree-like questionnaire ('Guided Tool Finder') towards tools
suitable for solving specific problems. This approach does not require
any previous knowledge of the available tools and allows our users to
concentrate entirely on describing their problems. Furthermore, many
HNB tools have been pre-configured with problem-specific optimal
parameters to prevent novices from being confused by too many
adjustable program parameters.
The task oriented
approach is meant for solving more
advanced biological problems that often require the interplay of more
than one tool. Mechanisms have been developed that allow for the
integration of programs and databases into automated program cascades
(or 'tasks'). With this approach, no further user interaction (i.e. for
data reformatting or transfer) is required once a task has been
launched."
Tools & Protocols
Directories
Genome Analysis
Sequence Analysis
Restriktionsanalyse im WWW
Primer
Design
Phylogeny
RNA Analysis
Literature
- BioMed
Central
Gateways
Collections of content and
resources from journals
and sites published by BioMed Central, of interest to researchers in
particular subject areas. The research articles in all journals
published by BioMed Central are open access.
- Nucleic
Acid Research
Each year, the first issue is
devoted to biological
databases
and a later issue to relevant web-based software resources.
Included is a
collection of over 850 Molecular Biology Databases, divided into the
following categories: Nucleotide
sequence databases, RNA sequence
databases,
Protein sequence databases, Structure Databases, Genomics Databases
(non-vertebrate), Metabolic and Signaling Pathways, Human and other
Vertebrate Genomes, Human Genes and Diseases, Microarray Data and other
Gene Expression Databases, Proteomics Resources, Other Molecular
Biology Databases, Organelle databases, Plant databases, Immunological
databases.
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